Projects

Projects

Projects are posted to help find interested individuals with appropriate expertise to implement needs

October 31, 2019
Git/GitHub
HPC/GPU Computing
MLib/Machine Learning
NLP Tools
Python
PyTorch
SQL
TensorFlow
Various projects are available in the Arnaout Laboratory at UCSF.
October 31, 2019
R
We are developing methods for single cell analysis for transcriptomes which will help map the organs studied. The technologies include Scrnaseq/ snrnaseq/ muxseq/ atacseq of Kidney, pancreas, blood, bone marrow.
October 30, 2019
MLib/Machine Learning
R
We are generating data using bulk RNA Seq and exome Seq and would analyze it to identify individual specific signatures that is believed to take us towards personalized medicine.
October 30, 2019
MLib/Machine Learning
R
In this we are processing biosamples to profile microbiome either through metagenomics or 16S sequencing
October 30, 2019
MLib/Machine Learning
R
We are employing CyTOF method to profile lineages of different immune cells at the time of rejection and CMV infection.
October 30, 2019
MLib/Machine Learning
R
We are interested in the impact of allo and heterologous immunity in the rejection and infection of transplanted kidneys due to rejection and CMV infection.
October 29, 2019
MLib/Machine Learning
R
We are assessing metabolome to find surrogate biomarkers for organ rejection after transplantation.
October 29, 2019
MLib/Machine Learning
R
Study of potential biomarkers of human diseases including organ transplantation and infection
October 28, 2019
MLib/Machine Learning
NLP Tools
The RISE registry includes complete EHR data for over 300 rheumatology practices across the United States, including over 400 million clinical notes. We will use natural language processing to extract key information from these clinical notes.